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The catalogue sets as one long table

Description

One row per entry and software version it applies to, as apb-catalog table prints it.

Usage

catalogue_table(catalogue = NULL)

Arguments

catalogue One set’s name; NULL lists every set of the bundle.

Value

A data frame with columns set, source (the conversion software, an app or annotation:<convention>), software_version_pattern (NA for an entry of every software version), level, location, table, name (prefix:<prefix> for a field found by column-name prefix), key, kind, one qualifier.<name> column per other qualifier, requirement and entry_id.

Examples

         set    source software_version_pattern           level location table
1 confidence  AlphaDIA       ^1\\.12(?:\\.|-|$) peptidoform_ion   layers  <NA>
2 confidence  AlphaDIA                    ^2\\. peptidoform_ion   layers  <NA>
3 confidence AlphaPept                ^0\\.5\\. peptidoform_ion   layers  <NA>
4 confidence    DIA-NN        ^1\\.[0-7](\\.|$) peptidoform_ion   layers  <NA>
5 confidence    DIA-NN         ^1\\.[89](\\.|$) peptidoform_ion   layers  <NA>
6 confidence    DIA-NN                  ^2\\..* peptidoform_ion   layers  <NA>
     name     key    kind qualifier.stage requirement
1  QValue q_value q_value  identification        <NA>
2  QValue q_value q_value  identification        <NA>
3 Q_Value q_value q_value  identification        <NA>
4 Q_Value q_value q_value  identification        <NA>
5 Q_Value q_value q_value  identification        <NA>
6 Q_Value q_value q_value  identification        <NA>
                                       entry_id
1 AlphaDIA/1.12/peptidoform_ion/layers/QValue/-
2  AlphaDIA/2.x/peptidoform_ion/layers/QValue/-
3  AlphaPept/*/peptidoform_ion/layers/Q_Value/-
4     DIA-NN/*/peptidoform_ion/layers/Q_Value/-
5     DIA-NN/*/peptidoform_ion/layers/Q_Value/-
6     DIA-NN/*/peptidoform_ion/layers/Q_Value/-